Basic Information
VIS ID
TVIS42000515
Fusion event
EBV-chr14 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
132959
Orient
+
Integrated sequence
CGGCCATGAGCAACACGGCCAACCCGCAAAGCGTTACTCGCAAGGCACAGAGGCTAGAGGGCACCGCCCAGTTGTGTGACTGTGCCAATTTTCTTCGCAC| |GTCCTGCCCCCCCGTGCTGGGCAGTCAGGGCCTGGAAGTCTTGGCGGCGTTGGTATTTAAAAACCAGCGATCCCTGAGAACGCTCCAGGTAGAGTTTCCA
Host Sequence
Chromosome
chr14
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
97369356/96903019 (Hg38)
End
97369356/96903019 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1260a/Upstream/1765033; hsa-mir-1185-1/Downstream/3206400;
Nearest TSS
ENST00000550708/Upstream/25629; ENST00000557745/Downstream/213336;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/105117, chr14-CpG: 54/Downstream/130249
Upstream sequence
GGGAAAGCAGGGGGCATTTCGCCAGTGGCCACAGCCCCCTACCCTGCTCCTTGAAGGCATCTAAGAGACCCTATGGCCTTACCACAGGTGCAACCTCCCT
Downstream sequence
TTATAGTGCCCCGACAAACTCATGGAAATACTGGAACAATAATTGTCTGCTGACTTACtctttgatgctcaatggctagaacatagtggacactcaacaa
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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