Basic Information
VIS ID
TVIS42000516
Fusion event
EBV-IGH integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
10229
Orient
-
Integrated sequence
TGAATTTGACATTTTTATTAACTACATAGAAGCATACATGACAATTAAAGCCAGGTGATAATTCCATACCCTGGAAGCAGGAGATGGGTGCATTTCACCC| |CAACCCCCCCTTTCGACTGTCATTTACAATAAAATGAAACCTTTTATTCTTGATTGCCTCTTGTGTTCTTGCCGCCCAGGTACCTTCCTGTGTTCTCCCC
Host Sequence
Chromosome
chr14
Cytoband
q32.33
Reference genome
GRCh37/hg19
Start
106980666/106524723 (Hg38)
End
106980666/106524723 (Hg38)
Orient
+
Location type
Intronic
Target gene
IGH
Nearest miRNA
hsa-mir-1185-1/Upstream/665170; hsa-mir-5195/Downstream/326162;
Nearest TSS
ENST00000550708/Upstream/5696; ENST00000518187/Downstream/6748;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/41912, chr14-CpG: 17/Downstream/288135
Upstream sequence
tatcacttcctctgggaagccttacccaatcctgtcactctgggtgaggagtctctcctatctgctcccTCTTTTACAACTGTTTTTATAATGATATATG
Downstream sequence
aaaggccagaagggttttcttgcctggtcccaggtacttcctcacaggtgccggcgtcgcaaaccccgtgcaagcttccagcttttctatcttagtgtac
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate