VISDB Viral Integration Site DataBase

VIS ID

TVIS42000517

Fusion event

EBV-TUBGCP5 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

78490

Orient

+

Integrated sequence

GGACTTGGTGTCACCGGTGATGCGCCTGACGTTGTGCCGGCTGGTGTTGGGCTGGTGACATCCGCGGTGGATACAGTGGGGCCTGTGCTTGCAGGTGCGG| |TGAGGTTGGTAGGCACGTGAGTAGAGCTGGGTAGACCTGTCGTTGTATTGGGATCAGCAAATCCAGTTGTATTCAAGGTAGGGGAGGTGGTGGTGCTCTC

Chromosome

chr15

Cytoband

q11.2

Reference genome

Start

End

22874624/22998442 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-21-5p ; hsa-mir-3152-5p ; hsa-mir-4774-3p ; hsa-mir-6836-3p ; hsa-mir-6749-3p ; hsa-mir-4465 ; hsa-mir-26b-5p ; hsa-mir-26a-5p ; hsa-mir-6829-3p ; hsa-mir-1297 ; hsa-mir-6791-3p ; hsa-mir-6778-3p ; hsa-mir-2116-3p ; hsa-mir-5697 ; hsa-mir-500a-5p

Nearest miRNA

hsa-mir-1268a/Upstream/773113; hsa-mir-10393/Downstream/199385;

Nearest TSS

Nearest CpG islands

None/Target, chr15-CpG: 55/Upstream/17312, chr15-CpG: 87/Downstream/40714

Upstream sequence

GTGTCCGGGGAAGACAGTGCAGAGCAGTGAACACAATGTTAGGCCTGCAGGACGGGTCTGTCTCTGCTGGTTCGCAGGGGGCTGAATGAGCCCAACTCGG

Downstream sequence

TGTTTTGTTGTGCCTGAGAAGTTCTACATGGAAAATAGCTTCAACTGATAGCGATAAATGTAAAAGGCCAACTTCACTTAGGGCCAACTGTTGGTACATA