VISDB Viral Integration Site DataBase

VIS ID

TVIS42000518

Fusion event

EBV-SLC12A6 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

95175

Orient

-

Integrated sequence

GGCCAGCCCGGGGGGACCTCCCCTGCTGTTCCCCCAGTTTGCCCCATCGTTTCCCTGACGGCCTCAGGGGCCAAGCAAAACCGCGGGGGCATGGGATCCT| |TGCACTTAGCCAAGCCTGAGGAAACCTCCCCCGCCGTCTCCCCAGTATGCCCCATCGCTTCCCCAGCGGCCTCCAGGTCCAAGCAGCACTGCGGGGTCAC

Chromosome

chr15

Cytoband

q14

Reference genome

Start

End

34544993/34252792 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-652-3p ; hsa-mir-126-5p ; hsa-mir-888-5p ; hsa-mir-4795-3p ; hsa-mir-5689 ; hsa-mir-106a-5p ; hsa-mir-106b-5p ; hsa-mir-17-5p ; hsa-mir-186-3p ; hsa-mir-20a-5p ; hsa-mir-20b-5p ; hsa-mir-302a-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-302d-3p ; hsa-mir-302e ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-4438 ; hsa-mir-4731-5p ; hsa-mir-5089-5p ; hsa-mir-5095 ; hsa-mir-512-3p ; hsa-mir-519d-3p ; hsa-mir-520a-3p ; hsa-mir-520b ; hsa-mir-520c-3p ; hsa-mir-520d-3p ; hsa-mir-520e ; hsa-mir-520g-3p ; hsa-mir-520h ; hsa-mir-526b-3p ; hsa-mir-5589-5p ; hsa-mir-5702 ; hsa-mir-619-5p ; hsa-mir-6504-3p ; hsa-mir-6506-5p ; hsa-mir-6890-3p ; hsa-mir-7151-3p ; hsa-mir-93-5p ; hsa-mir-937-5p

Nearest miRNA

hsa-mir-1268a/Upstream/3187651; hsa-mir-10393/Downstream/129277;

Nearest TSS

Nearest CpG islands

None/Target, chr15-CpG: 55/Upstream/42494, chr15-CpG: 90/Downstream/84582

Upstream sequence

agtcttgctaagttgcccaggctggatttgaactcctgcactcaaTGCCTAGAGGGATTTACTTATTGGAAATACACCGCGTGTCTTTTCAAGGCACATC

Downstream sequence

TCTAAAAGAATACTGAAGTCCTTTTGTTGTTCTTATAAAGTAAAAAGCACTCCTCTTTTTTTGGCCTAGAAAAGCCTAACATTCATAACAAACACCTTGA