Basic Information
VIS ID
TVIS42000522
Fusion event
EBV-DNAAF4-CCPG1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
79185
Orient
+
Integrated sequence
ATACCCTGTACCAGGTATTGGGGTGGCCACGGGACTCGTTGATGTGAGAATTCCGCCGCTGGGAACATGGCTCTCGTATCCACTGCAGGTGATGTTAAAT| |TTGTTGTCTCCGGGCAGAACTTGTGAAATTTCGCCATCCTCCATAATACACTCAATATCTATCTCATTACCGAGCATTTCTGTTTTTACGCTGAAATTCG
Host Sequence
Chromosome
chr15
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
55720706/55428508 (Hg38)
End
55720706/55428508 (Hg38)
Orient
+
Location type
Intronic
Target gene
DNAAF4-CCPG1
Nearest miRNA
hsa-mir-10393/Upstream/55474; hsa-mir-11181/Downstream/3742675;
Nearest TSS
ENST00000557528/Upstream/10810; ENST00000561155/Downstream/69833;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/19900, chr15-CpG: 37/Downstream/69595
Upstream sequence
CCAGGCATCTGAAGCCAGTATGCATTTCCAAGTAATGGTGGGAAAGTTGGATAGGTTGAAAGGAAAACAACAACAAAACAAAAAACAGCTTAACGTTGAA
Downstream sequence
ttttgagatggagtcttgctctttcacccaggttggagtacagtggcacaatctcggctcactgcaacctccgcctcccgagttctcgccattctcctgc
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate