Basic Information
VIS ID
TVIS42000523
Fusion event
EBV-chr15 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
66561
Orient
+
Integrated sequence
GGCCCAGGGGAGGGACCAGGTGGGTGGTGTGTGCCCGGGGGATTGGAAGTGTGCTATAAGTACCGTCAGCTCTTCTCAGAGGATGATCTGTTGGAGACTG| |ACGGTTTTACTGAACGAGCCTGTGAATCTTGCCAATAAACGTTTATTGCCATGTCCAAGTTGTTGTACGTGCGTGATCATGAGGGCTTTGCCTGCCTAAC
Host Sequence
Chromosome
chr15
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
58079571/57787373 (Hg38)
End
58079571/57787373 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10393/Upstream/2414339; hsa-mir-11181/Downstream/1383810;
Nearest TSS
ENST00000557528/Upstream/41266; ENST00000559684/Downstream/167896;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/80186, chr15-CpG: 148/Downstream/277738
Nearby gene
LOC105370834(-4609) ;
Upstream sequence
ACTAAGCAGAAGATAATTTGAGTAGAAATAAAGGTAATTTGAACTATATTTTTGAATTTGATATGACAATATCTTACATTGATTATTTGGTAGGCATTAG
Downstream sequence
aaccgatgtgaatgtatttaatgccattgaagtgtacacttaaaaatctaacatagtaaattgtatgttatgtttattttaccacaattaaaaaTGGAGA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate