Basic Information
VIS ID
TVIS42000525
Fusion event
EBV-LOC105370850 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
68525
Orient
-
Integrated sequence
CATAGCTGTGGTGGCCGGCCTGCTGACGTCAGCGGGGGACCTGCCGTTGGATCTTAGTGTTATTTTATTTAACCACGCCTCCGAAGAGGCGGCCGCCAGT| |ACGGCCTCTGAGCCAGAAGATAAAAGTCCCCGGGTGCAACCACTGGGCACAGGACTCCAACAACGCCCCAGACATACGGTCAGTCCATCTCCTTCACCTC
Host Sequence
Chromosome
chr15
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
62575088/62282889 (Hg38)
End
62575088/62282889 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA15A
Target gene
LOC105370850
Nearest miRNA
hsa-mir-10393/Upstream/3111627; hsa-mir-11181/Downstream/21769;
Nearest TSS
ENST00000557528/Upstream/8034; ENST00000569913/Downstream/1301;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/58283, chr15-CpG: 126/Downstream/108057
Upstream sequence
aatggagagaaggagaatggggagttgttatttaatgggtctagaatttcagttttgtaaactgaagagttctggagatggatggtggtgatggttgcac
Downstream sequence
tactcgggaggctgaggcaggagaatggcgtgaacccaggaggcagagcttgcagtgagccaagaccgcaccactgcactccagcctgggtgacagagca
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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