VISDB Viral Integration Site DataBase

VIS ID

TVIS42000526

Fusion event

EBV-CA12 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

136598

Orient

-

Integrated sequence

CGCAACACCTTTATGACACTGCTTCAGACCAACCTGGACAACAAACCGCCGAGGCAGACCCCGCTACCCTACGCGGCCCCGCTGCCCCCCTTTTCCCACC| |AGGCAATAGCCACCGCGCCTTCCTACGGTCCTGGGGCCGGAGCGGTCGCCCCGGCCGGCGGCTACTTTACCTCCCCAGGAGGTTACTACGCCGGGCCCGC

Chromosome

chr15

Cytoband

q22.2

Reference genome

Start

End

63648988/63356789 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-16-5p ; hsa-mir-335-5p ; hsa-mir-124-3p ; hsa-mir-103a-3p ; hsa-mir-18a-5p ; hsa-let-7b-5p ; hsa-mir-1277-5p ; hsa-mir-3924 ; hsa-mir-190a-3p ; hsa-mir-502-3p ; hsa-mir-501-3p ; hsa-mir-5011-5p ; hsa-mir-6820-3p ; hsa-mir-3164 ; hsa-mir-3118 ; hsa-mir-134-5p ; hsa-mir-4646-3p ; hsa-mir-2355-3p ; hsa-mir-4433b-5p ; hsa-mir-103b ; hsa-mir-4735-3p ; hsa-mir-329-5p ; hsa-mir-18b-5p ; hsa-mir-548m

Nearest miRNA

hsa-mir-10393/Upstream/532748; hsa-mir-11181/Downstream/514141;

Nearest TSS

Nearest CpG islands

None/Target, chr15-CpG: 55/Upstream/34903, chr15-CpG: 33/Downstream/24900

Upstream sequence

aaacaagataatttggtaatatggtcgatataaccatggcctagaatcaagtagtggtgcctcctagaatggcacatatattccaTATTTACTCTCTAGA

Downstream sequence

tgagccaacacgcctggcctgatccagtaattctaatcctagatatagatcccaaagtattaaaagcagggattcaaagagatacctgtacacctgtgtt