Basic Information
VIS ID
TVIS42000527
Fusion event
EBV-HIGD2B integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
106450
Orient
-
Integrated sequence
GTGCTGGAAAGAGAGGCTGGAAGATGAGGCCCTGCTCATCCTCCACCCTGGCGGCGGACAAGAGTCTGCGGTCTCGGGTTCTAAATGAAAGGTCAAATAG| |GTCCTTCTCGGCGGCATCGGCGAGCATAGCAATGAGCCCCCCGCTGCGCCTGAGCTCCCGCTCCCATCGCAAAAAGTTGAGTTCGGTAGTCGAGGGCGCG
Host Sequence
Chromosome
chr15
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
72974787/72682446 (Hg38)
End
72974787/72682446 (Hg38)
Orient
+
Location type
Intronic
Target gene
HIGD2B
Nearest miRNA
hsa-mir-10393/Upstream/95133; hsa-mir-11181/Downstream/617464;
Nearest TSS
ENST00000557528/Upstream/23888; ENST00000566829/Downstream/3703;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/45209, chr15-CpG: 39/Downstream/3503
Upstream sequence
caggagatcgagaccatcctggctaacacggtgaaaccccttctctactaaaaatacaaaaaattagccgggcgtggtggcgggcgcctgtagtcccagc
Downstream sequence
aatcctggcattttgggaggccaaggcaggcagatcacttgaggtcaggagtttgagaccagcctggccaacatggtgaaatcctgtctctactaaaaat
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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