Basic Information
VIS ID
TVIS42000528
Fusion event
EBV-chr15 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
59921
Orient
-
Integrated sequence
AGGCGGCGAGAACCGAGGGGCTTCTGGGGGTGACTGTGATCTGTTCCGGATTTAGGTCCATGGCGGGTGTGTATGTTTTAATAGGGGTGGTCTCTGGCGC| |GGCAGGATGATGGTCGAGGACGTCCACCAGGGCCTTGCAGATGCTCTTGCCTAGATACAGGATGTCGTCCATGCTGAGGGGAGGTGGGGTGTCTGCTCCC
Host Sequence
Chromosome
chr15
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
73231708/72939367 (Hg38)
End
73231708/72939367 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10393/Upstream/352054; hsa-mir-11181/Downstream/360543;
Nearest TSS
ENST00000557528/Upstream/153521; ENST00000558485/Downstream/112343;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/142163, chr15-CpG: 125/Downstream/112071
Upstream sequence
tttttgtatttttaatagaaatggggtttcaccagtctcgatctcctgacttcaagtgatccacccaccttggcctcccaaagtgctgggattacaggtg
Downstream sequence
ggcttcagcatgtataatcggccagttgaagagagggactccaaaagactgaagatcctgaggcTATGTGAGTTAATGTAAGTAAAAACATGCCAATTGA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate