Basic Information
VIS ID
TVIS42000529
Fusion event
EBV-LOC112268142 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
150115
Orient
-
Integrated sequence
GAACAAAAACGCGACCGTAAAGTAGCGGCTGCCGTAGGTGGTCGTGTTGAAGGAGAAAGAAGGTAACTTGAAGCTGAGTATCTGGCCCACCGAGGGGCAG| |GGAGGCAGCTCTTGGCACTGCGCGTCCAGCTGCAATACCTGCTTGTTGGTGACGCGGACGTATGAGGGGAAGATCTCGTACTTCCACACGCCTCTCATGA
Host Sequence
Chromosome
chr15
Cytoband
q25.1
Reference genome
GRCh37/hg19
Start
78976254/78683912 (Hg38)
End
78976254/78683912 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC112268142
Nearest miRNA
hsa-mir-10393/Upstream/2921597; hsa-mir-11181/Downstream/525876;
Nearest TSS
ENST00000557528/Upstream/23380; ENST00000559697/Downstream/24140;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/42433, chr15-CpG: 17/Downstream/67170
Upstream sequence
TTCCCCATCCTCTTCCTTTTCTTCCACACCTCTGATATGAAGGACATTATTATACCTTATTAAAACTTCATCCACACTAggcatggtggctcatgcctgt
Downstream sequence
tctactaaaaatacaaaaaattagccaggcgttgtggcaggcgcctgtaatccagctactcgagaggctgaggcaggagaacagtttgaacctggaaggc
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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