Basic Information
VIS ID
TVIS42000530
Fusion event
EBV-ARNT2 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
153156
Orient
+
Integrated sequence
GGTTGGGAATCTTCGCCAGCCCCCCGTCCTGCTATCCCGCTCGTCGCCGCGCCTCCCATGCTAAGGGCCCCCTTCCTTTCCCTTGACTTTGGGGATATTC| |GGAGTCTGCTCTCGCCGCTCTCTTCTCTCGTTTAAACGAGAGAATAGTAGTAGGGTCCAGTCTCAGGCCCCCTCACTTTGGGTCTTAGAATGGTGGCCGG
Host Sequence
Chromosome
chr15
Cytoband
q25.1
Reference genome
GRCh37/hg19
Start
80807221/80514880 (Hg38)
End
80807221/80514880 (Hg38)
Orient
-
Location type
Intronic
Target gene
ARNT2
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-let-7e-5p
Nearest miRNA
hsa-mir-10393/Upstream/1305009; hsa-mir-11181/Downstream/66223;
Nearest TSS
ENST00000557528/Upstream/44637; ENST00000558849/Downstream/36224;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/109829, chr15-CpG: 187/Downstream/179975
Upstream sequence
cagaaattcgaggtgatgtaaccaaggcattgtgaaacccctgggggtccctcggaaatcctgggatgggcagtagcttttccgtggtacatgggatgga
Downstream sequence
atctcaaaaaaacaaacaaacaaacaaaaaacaaaaaaacCCACAACTAATTGTACAAAGGTGATTGGAGTCTTAGCAACTTGTTTCTAGGTTCTGTCAC
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate