Basic Information
VIS ID
TVIS42000532
Fusion event
EBV-WDR93 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
122297
Orient
+
Integrated sequence
CGGTACTCTGCAAAGAGCTGCTCTGGCCGGTTGAAGGCTTCCACGGCCCGCTGCTGAGGATTGCGCATAACAAAGGTGGCAACATCCTGGTGCATGGTGG| |CAGCCACTCGCGGGTCCCCGTAAAACATATGGAAAGGAATGGCGTGAAAGAGACACTGGGTGACGGCCCGGGTCCTCTCGGAGAAGGCAAAGGCCACCAG
Host Sequence
Chromosome
chr15
Cytoband
q26.1
Reference genome
GRCh37/hg19
Start
90247202/89703971 (Hg38)
End
90247202/89703971 (Hg38)
Orient
-
Location type
Intronic
Target gene
WDR93
Nearest miRNA
hsa-mir-10393/Upstream/335865; hsa-mir-1302-10/Downstream/146666;
Nearest TSS
ENST00000557528/Upstream/13127; ENST00000557825/Downstream/15635;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/13119, chr15-CpG: 146/Downstream/46019
Upstream sequence
gaggctgaggcaggagagtcgcttgaacccaggaggcagaggttgcagtgagccaagatttcgccactgtattccagcctgggcaacacagcaagacccc
Downstream sequence
CTATGCAGTCATTAAGGAGAGAAAATTCTGAACATCTGAACCAAGACAGGGGCTGTTAAAATGAAAAGAAAggccaggtgtggtggctcatgcctgtaat
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate