Basic Information
VIS ID
TVIS42000533
Fusion event
EBV-chr15 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
135660
Orient
-
Integrated sequence
GGAGGAGCCCGTGAATCCCAGGTGTCATTCGCGCGTCATCCCCGCGCACCCCCAGTCCCATTAACATAGCGGGCACAATGGTGCAGGCACCGTCTGTATA| |CGTCTGCGGCTTCGTGGAGCGCCCGGACGCCCCACCCAAGGACGCCTGCCTTCACCTGGATCCCCTCACCGTCAAGAGCCAGCTCCCTCTGAAGAAGCCC
Host Sequence
Chromosome
chr15
Cytoband
q26.2
Reference genome
GRCh37/hg19
Start
98479941/97936711 (Hg38)
End
98479941/97936711 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10393/Upstream/1603404; hsa-mir-1302-10/Downstream/847715;
Nearest TSS
ENST00000557528/Upstream/60422; ENST00000268042/Downstream/23987;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/283550, chr15-CpG: 113/Downstream/23593
Upstream sequence
attacatagccacaagtgttttttatagcacctcaaaatggatgaagacaCATCCTGACCCTCCATTTCACtgtttttttgtgttttttttttgttttgt
Downstream sequence
cttctggagtggaaaaaggaaccagacacaaaatccagaggagtgaaaatgaaggagccagtgaagtgaagtctccctctatcagccctgcaggctgcct
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate