Basic Information
VIS ID
TVIS42000534
Fusion event
EBV-LRRK1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
79474
Orient
-
Integrated sequence
TTATCCCACTTTATGTATGGCACTGTTTCTGGTATCAGGTACACGGGGTTTTGCATTTCTGCATGGTGGCACCACATGGTTCCAAACACATCTTGAAAGT| |AGACATCTACAGATTCCAGGCTTACTTGTTGCTCCTCTCCGGTGGTGACGTTAATTGGAAGCTTCTTAGACCGCATAGTTAGAGCCAATTCTCCTGCACC
Host Sequence
Chromosome
chr15
Cytoband
q26.3
Reference genome
GRCh37/hg19
Start
101520722/100980517 (Hg38)
End
101520722/100980517 (Hg38)
Orient
+
Location type
Intronic
Target gene
LRRK1
Nearest miRNA
hsa-mir-10393/Upstream/2196015; hsa-mir-1302-10/Downstream/979942;
Nearest TSS
ENST00000557528/Upstream/55914; ENST00000525617/Downstream/41192;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/6399, chr15-CpG: 20/Downstream/27953
Upstream sequence
CACTGAAGAACTTTCTGCAGGAGAGTGACCTGACCAGACTGGCATTTAAGAAGGGCACTCTAGCAGGAGTTTGAAAAAGGCAAAATGAGAGGCAGAAAAA
Downstream sequence
tactcaagtctacatgtgtgacaaaatgcagaactatatacatacattgtactaacgtcaagtatcttgctacaattatgtaacatattgccatcggggg
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate