Basic Information
VIS ID
TVIS42000536
Fusion event
EBV-IQCK integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
135448
Orient
+
Integrated sequence
CACCCGGGCCAGGGCCCGGTAAAGCAGGTACCAGTATTCATCCGGCACCTTGCGTGCCAACACACGATTCGTGCGGTTTCCAGTATTTATCACGGCTTCC| |CGCCACAGGTAAAAGTTAACACTTAGGGTCAGCAGCTTGGTCAGGGATAGGTGCAAAAACCTGAGCTCGTCCTCGCGCAGAGCGCAAAGCGGCCAGTTCT
Host Sequence
Chromosome
chr16
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
19766391/19755069 (Hg38)
End
19766391/19755069 (Hg38)
Orient
+
Location type
Intronic
Target gene
IQCK
miRNAs that regulate target gene
hsa-mir-124-3p
Nearest miRNA
hsa-mir-1225/Upstream/1260493; hsa-mir-11401/Downstream/1750980;
Nearest TSS
ENST00000527434/Upstream/19716; ENST00000568236/Downstream/6061;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/36454, chr16-CpG: 160/Downstream/128574
Upstream sequence
ttccacggttagatgcgccctcatgtagacgggctgcggtgtttatctcttcaccgctggtggatgtctgggccgtttcaccctttgctgctgttcatgg
Downstream sequence
GGCATCTGGTTATAGGCCAAGTGTATGCTTATTTCTGGGATCATAGTTACGGATGGTTTCATCGTGTATGGGAATTATCGGGTATCTGGAAATGTATTGT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate