Basic Information
VIS ID
TVIS42000539
Fusion event
EBV-chr16 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
70230
Orient
+
Integrated sequence
TTGGCGTCAGGAGACACGGCTCTGTCAGTTATCACCGTACCATGAGTGCCATGTGTGTCCAGTGCCTAATCACCGTTCCTCATTTTGTGTGCCTCCTCAA| |ATGTTCCAGAAGTCGGCCACAGGGGAGGTGGCTGAATTAGGGCCTTTTCCCTCATTCCCCCATGAGACCCACGTGGCAGGCCTAGGGGCTACATTCGCCT
Host Sequence
Chromosome
chr16
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
24393121/24381800 (Hg38)
End
24393121/24381800 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA16E
Nearest miRNA
hsa-mir-1225/Upstream/178569; hsa-mir-11401/Downstream/1643437;
Nearest TSS
ENST00000527434/Upstream/126247; ENST00000568316/Downstream/113377;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/125501, chr16-CpG: 116/Downstream/157497
Upstream sequence
agtggaaaaaaaatagaacagaagaccaaggcactagatgaaaaactataaataaaataatagcaaacagaattcaataatacattaatagagtcactaa
Downstream sequence
aaactagtcccaactgactaaacattttaactttcttagataaggtaggcatgtaagggaggtgacaagagagagaaggggggttatttatggagggact
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate