Basic Information
VIS ID
TVIS42000540
Fusion event
EBV-chr16 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
162263
Orient
+
Integrated sequence
GGCACAGCATCAGCACCTTGGACATGCGCACAGGCAGCCGCCGGCCGTACACCCGGCCCTGCAGGGCCGCGTCCAGGTCTGGCAGGTCGCAGGTGGGCTC| |CCCATGCACCACCTTGGCCTCCTTGGCCGTGAGGACCCCCTTGTCGATGGCCAGGCTCCTAAAGTTGGTGCACAGCGTCTGGTAGTGACCCTTTAGCCAC
Host Sequence
Chromosome
chr16
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
26939252/26927931 (Hg38)
End
26939252/26927931 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA16E
Nearest miRNA
hsa-mir-1225/Upstream/902621; hsa-mir-11401/Downstream/1463051;
Nearest TSS
ENST00000527434/Upstream/206057; ENST00000505035/Downstream/138776;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/1234621, chr16-CpG: 34/Downstream/181759
Upstream sequence
gagaacacagaacagaggaaagcaggggtttttattaactctactgcagcttctgcttctgtgtctttccccaattggctagggttggactgcacagtct
Downstream sequence
gagagaaagaaagagagaaagaaagaaaaggaaggaaggaaggaaggaaggaaggaaggaaggaaagaaggaaggaaggaaaagaaagaaagtaaaagaa
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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