VISDB Viral Integration Site DataBase

VIS ID

TVIS42000541

Fusion event

EBV-GTF3C1 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

50042

Orient

+

Integrated sequence

GGTGGATAGAGAGGAGGGGGATCCGGAGGGGACCACTAGGTCGCCGGAGGTCGACCCTCCTGTCACCACCTCCCTGATAATGTCTTCAATAGACAGAAAT| |TGGGTGACCACTGAGGGAGTGTTCCACAGTAATGTTGTCTGGTCGCTAGATGGCGCGGGTGAGGCCACGCTTTGCGAAAACGAAAGTGCTTGAAAAGGCG

Chromosome

chr16

Cytoband

p12.1

Reference genome

Start

End

27484224/27472903 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-34a-5p ; hsa-mir-16-5p ; hsa-mir-1296-5p ; hsa-mir-941 ; hsa-mir-935 ; hsa-mir-760 ; hsa-mir-615-3p ; hsa-mir-598-3p ; hsa-mir-484 ; hsa-mir-324-5p ; hsa-mir-92a-3p ; hsa-let-7e-5p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-mir-1260b ; hsa-mir-1207-5p ; hsa-mir-1249-5p ; hsa-mir-1273h-5p ; hsa-mir-1321 ; hsa-mir-149-3p ; hsa-mir-1911-3p ; hsa-mir-30b-3p ; hsa-mir-3192-5p ; hsa-mir-3650 ; hsa-mir-3652 ; hsa-mir-3688-5p ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-3937 ; hsa-mir-4419a ; hsa-mir-4430 ; hsa-mir-4433a-3p ; hsa-mir-4433b-3p ; hsa-mir-4505 ; hsa-mir-4510 ; hsa-mir-4514 ; hsa-mir-4645-5p ; hsa-mir-4673 ; hsa-mir-4692 ; hsa-mir-4722-5p ; hsa-mir-4728-5p ; hsa-mir-4736 ; hsa-mir-4739 ; hsa-mir-4756-5p ; hsa-mir-4763-3p ; hsa-mir-5787 ; hsa-mir-6127 ; hsa-mir-6129 ; hsa-mir-6130 ; hsa-mir-6133 ; hsa-mir-644a ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6785-5p ; hsa-mir-6797-5p ; hsa-mir-6799-5p ; hsa-mir-6808-5p ; hsa-mir-6842-3p ; hsa-mir-6883-5p ; hsa-mir-6893-5p ; hsa-mir-7106-5p ; hsa-mir-7150 ; hsa-mir-891a-3p ; hsa-mir-940

Nearest miRNA

hsa-mir-1225/Upstream/1447593; hsa-mir-11401/Downstream/918079;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/158529, chr16-CpG: 56/Downstream/76785

Upstream sequence

tgcttgagcccaggaggtcaaggctgcagtgagctatgatcatgccactgcactccagcctgggtgacagagcaagaccctgtctcaaaaaagaaaggaa

Downstream sequence

AGGAGAACACAGATTCAACTCCtttttttttgagccagggtctcactctgttgcccaggctggagtacagtgacaccaacatagctcactgcagcctcga