Basic Information
VIS ID
TVIS42000542
Fusion event
EBV-chr16 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
137161
Orient
+
Integrated sequence
GGGCCCCTGCTACACCCACTCGGGGCCTTACGGATTTCAGCCTCATCAAAGCTACGAAGTGCCCAGATACGTCCCTCATCCGCCCCCACCACCAACTTCT| |CACCAGGCAGCTCAGGCGCAGCCTCCACCCCCGGGCACACAGGCCCCCGAAGCCCACTGTGTGGCCGAGTCCACGATCCCTGAGGCGGGAGCAGCCGGGA
Host Sequence
Chromosome
chr16
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
50042854/50008943 (Hg38)
End
50042854/50008943 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1225/Upstream/15845270; hsa-mir-11401/Downstream/283673;
Nearest TSS
ENST00000527434/Upstream/84789; ENST00000567712/Downstream/15467;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/131991, chr16-CpG: 61/Downstream/16013
Upstream sequence
tcctcctctgaggtcaattgccttatattatcctgttttattttctccatagcagccacctgaaacaatctcatttgcttactcattgtttGGAAGTCCC
Downstream sequence
tggggcattacctagtggagctgtgagaagaaggctgcagtcttccagatcccagaatcatagatccaccaacagcttgcaccatgcacctggaaaagct
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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