VISDB Viral Integration Site DataBase

VIS ID

TVIS42000543

Fusion event

EBV-FTO integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

10193

Orient

-

Integrated sequence

CAAGCTGCAGGAAAAAGGAATTTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTACATAGAAGCATACATGACAATTAAAGCCAGGTGATAATTC| |CATACCCTGGAAGCAGGAGATGGGTGCATTTCACCCCAACCCCCCCTTTCGACTGTCATTTACAATAAAATGAAACCTTTTATTCTTGATTGCCTCTTGT

Chromosome

chr16

Cytoband

q12.2

Reference genome

Start

End

53878798/53844886 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-let-7b-5p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7977 ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-6878-5p ; hsa-mir-4738-5p ; hsa-mir-6134 ; hsa-mir-6807-5p ; hsa-mir-4266 ; hsa-mir-4641 ; hsa-mir-1233-3p ; hsa-mir-1225-3p ; hsa-mir-8060 ; hsa-mir-4768-3p ; hsa-mir-4779 ; hsa-mir-4695-5p

Nearest miRNA

hsa-mir-1225/Upstream/3102509; hsa-mir-11401/Downstream/2400634;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/140563, chr16-CpG: 21/Downstream/277155

Upstream sequence

ggcagaggtttgctgcagggacggaaccctcatggagaacctccactagggcaatgcagaggggaagtgtaaagttggagcccccacacagaatctccac

Downstream sequence

TCCGTATTAGTTTTTAGTAGTGAGAGTTTTTTTTTTTTTTCTTCTAGTTTTGAATGTTGTTTCTTCTCAGGAACAGCTGACCTGACAATGGGGCCTTTCT