Basic Information
VIS ID
TVIS42000545
Fusion event
EBV-LOC101927605 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
154795
Orient
+
Integrated sequence
ATCGTCCAGCACCCGCCTGCAGGGGATGTGAGCGATCTTGGCAATCTCTGCCACCTCCACGTGGATCACGAAATGGTTTAGCAGATCCATGACCAGGGCC| |GAGTCCTGCACGCAGTACATGCCGAGCCGCCTGCGCCCCTCGGGGCCCGCTGCAAAGAGGCGAGGAATCTCCTTGTAATGCACATCCTCCTTCTTGGCCC
Host Sequence
Chromosome
chr16
Cytoband
q21
Reference genome
GRCh37/hg19
Start
60579034/60545130 (Hg38)
End
60579034/60545130 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC101927605
Nearest miRNA
hsa-mir-1225/Upstream/2772778; hsa-mir-11401/Downstream/6657191;
Nearest TSS
ENST00000527434/Upstream/21880; ENST00000562349/Downstream/1168928;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/789962, chr16-CpG: 117/Downstream/1490087
Upstream sequence
ATTTTCCTTTGCCATAGGACTCTATTTCTGGAATTCTGATGCTTATACAAAGGGGGAAATTCTCCCTTTGTGTTTATGAATACTTGCTCCTCTCTTTTTC
Downstream sequence
ctttaccttggaagttcttttgtgttagacctggaggtgaagcctaggactcagcagtttgaggaatccATTTTGGGTTACTGAAGGAGGAGCTCCACGA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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