Basic Information
VIS ID
TVIS42000546
Fusion event
EBV-chr16 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
125951
Orient
-
Integrated sequence
GCCGCCACCAACCTCACCCACCACCCACATCTAGTGGATACTCTGTACCACGCCTCTCCGCAGACCCCATTTCTGACACGCAGCGGTGCTCTATACCGCT| |TCGTCACCTGTTGCAACTGCACCCTGCCCAATATCTCCATCCAGCAGTGCAAGGCCGGGGACAGACCGGGGGACCTGGAGATCATTCTACAGAGTAACGG
Host Sequence
Chromosome
chr16
Cytoband
q21
Reference genome
GRCh37/hg19
Start
60680723/60646819 (Hg38)
End
60680723/60646819 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1225/Upstream/2874467; hsa-mir-11401/Downstream/6555502;
Nearest TSS
ENST00000527434/Upstream/123569; ENST00000562349/Downstream/1067239;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/891651, chr16-CpG: 117/Downstream/1388398
Nearby gene
GNPATP(+7252) ;
Upstream sequence
ctacactatgacagagcaTGTCTTGAGcagtggttcacaaaattaaatgggtttaaggaagacttacctggaagcacttattacaatgcaaattttcaag
Downstream sequence
AATTTCAAGGTAATTTTCTCTCTGATGATGTATGCTCGAGATATTTTGGGGCAAGGCAATAGGAGTCTGGAGCTTTGCTTACTGGGTCCTCAGAAATCTT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate