Basic Information
VIS ID
TVIS42000548
Fusion event
EBV-chr16 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
155294
Orient
+
Integrated sequence
TGGAAGAAGGCGTAGAGCATGTCCAGCTCCGATGGGAACTCGTAGACCTCAACCCCCTCTATGTCTTCGCAGGTGCCCAGCGTCAGCAGGATGCGCCTAT| |AGCGCCCGGCCTCCTCCCCTGTCGACCAGAGGACGCAGGATATCTGCAGGATCAGGTCAGCCTCGTTGGTGGCCGTGGGGAAGCCCTCCTCCCCCAGACA
Host Sequence
Chromosome
chr16
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
75968988/75935090 (Hg38)
End
75968988/75935090 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1225/Upstream/5904668; hsa-mir-11401/Downstream/933846;
Nearest TSS
ENST00000527434/Upstream/74223; ENST00000463177/Downstream/212689;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/286409, chr16-CpG: 18/Downstream/299989
Upstream sequence
ttgtttgtttttctttcaacagtcaggtccctcttccttagggctgctgccatttgcctagggtccactccagacccttttcacctgggtctctcctgca
Downstream sequence
TTTGGAGCAAAGTCAATGGGTTCAGAAAAAAAAGATGAAAGTATGTATGTACAGGAGTTTGTCATTGTACTGCCCAGAGCTTATCTTCTTTAAGTGTTTT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate