Basic Information
VIS ID
TVIS42000550
Fusion event
EBV-chr16 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
48523
Orient
+
Integrated sequence
GCCTGAGGAGTGCCCACTGTCTTCTGCCTATACCTGCCGTCTCTGAGGGGGGGAGAAAGACGGGCGGGGGCGTAGGGGAGGAGCTCGTGGGGGCCGGGGG| |GCCCTGCCTGAGCCGGGATGTTTTCGTGGCGATCGTAAGCCGCAATGTTCTCTCGTGTCTGCTGAACGTGCCTGCCGCGGGTCCCCGGGCCTACAAGTGT
Host Sequence
Chromosome
chr16
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
86018484/85984878 (Hg38)
End
86018484/85984878 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12128/Upstream/66462; hsa-mir-11401/Downstream/1849714;
Nearest TSS
ENST00000527434/Upstream/3128; ENST00000601250/Downstream/508;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/10797, chr16-CpG: 71/Downstream/301691
Upstream sequence
ccacgaagcccgactgatttttgtatttttagtagagacagggttttgccacgttaaccaggctggtATTGTTTTCATTATTGTGGTTATCATTATTTAT
Downstream sequence
TTACTATTATCTTGATTGACATTTTCATTTTAACGCATAGGAAACAGGCCTGGAGAGAGGAAGTCCGTTTCGTGATGGCTGGAGAAAGGGCGTCTCCTGA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate