Basic Information
VIS ID
TVIS42000552
Fusion event
EBV-chr17 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
41102
Orient
+
Integrated sequence
GGAATAGGGTATTGCAGCTGGGTATATACCTATAGGTATATAGAACCTAGAGGAAGGGAACCCTATAGTGTAATCCCTCCCCCCCCTACCCCCCCCTCCC| |TTACGGTTGCCTGAGCCCATCCCCCACCCCAGCACCCCGGGGTGACGTGGCACCCCGCGTGCCTTACTGACTTGTCACCTTTGCACATTTGGTCAGCTGA
Host Sequence
Chromosome
chr17
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
1953328/2050034 (Hg38)
End
1953328/2050034 (Hg38)
Orient
-
Location type
Intronic
Target gene
MIR132 ; MIR212
Nearest miRNA
hsa-mir-132/Upstream/26; hsa-mir-10226/Downstream/237;
Nearest TSS
ENST00000595228/Upstream/5066; ENST00000574370/Downstream/4120;
Nearest CpG islands
chr17-CpG: 810/Target, None/Upstream, None/Downstream
Nearest cancer related gene
MIR212(OG, No orient, 0)
Upstream sequence
gctggttaaacacacattgctggcctccacccccagagttcctgattccctgggtctggggtgaggtccaagaatctgctatctaacaagttgttaggcg
Downstream sequence
cgggctgacgtcagggccgcgggggggcgggcggggcggcgggggctgaggagcgcgcgtgggcCACCGCCCCTCGCAGCCCCTAGGGACCCGGACGGGG
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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