Basic Information
VIS ID
TVIS42000553
Fusion event
EBV-ALOX12P2 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
111843
Orient
-
Integrated sequence
TAATTTCCCACAGCGTCCACCATATATCTTTCTGCCTCTCCCGTTAGAATTAGGCAAGGATCATACGTGTCCACCGGCCTTTTATACTGAGCGTTTAGGT| |TTTGTTTATGTAGCAAGCACAAAAGGCACACACGAGTGATGCAAAAGGGTTCCTGAGGCAGCAGGCAGAGCTGTTTTGCCATTTTATTCAGGCGGCTAAC
Host Sequence
Chromosome
chr17
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
6770298/6866979 (Hg38)
End
6770298/6866979 (Hg38)
Orient
+
Location type
Intronic
Target gene
ALOX12P2
Nearest miRNA
hsa-mir-1253/Upstream/211470; hsa-mir-10226/Downstream/150636;
Nearest TSS
ENST00000595228/Upstream/35218; ENST00000480801/Downstream/111981;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/90588, chr17-CpG: 21/Downstream/27131
Upstream sequence
GGAATAGTTTTTTCCCCTCACAATTTCAAGACttctcttttattcttctttttttcgagacagtttcactcttgtcactcaggctggagtacaatggcac
Downstream sequence
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaaacaccaatcctgtcaaaaacaagtgacgtgcttaggccacctaatatttaaggaagg
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate