VISDB Viral Integration Site DataBase

VIS ID

TVIS42000554

Fusion event

EBV-GAS7 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

152024

Orient

+

Integrated sequence

AAACCAGGAGAAGGCGCAAATGAGTCCGGTGAAGGTGACGTTGCATATCAGGCGCGGCTTCCTTCCGAATTTTGTGCGCAAAAGTTTCCAGATGATGATA| |ACTGTGAGGAGGACGATCAGGACTGCCGCCAGTAGGTAGCAGCCGGCTTTCAGTCCTTGGACGGCCGTGTGCATGCCTTTGGTGGGGCCTTCCCTGCACA

Chromosome

chr17

Cytoband

p13.1

Reference genome

Start

End

10065628/10162311 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-128-3p ; hsa-mir-599 ; hsa-mir-3161 ; hsa-mir-1255b-5p ; hsa-mir-6744-5p ; hsa-mir-1255a ; hsa-mir-1287-5p ; hsa-mir-4487 ; hsa-mir-450b-5p ; hsa-mir-384 ; hsa-mir-3685 ; hsa-mir-527 ; hsa-mir-518a-5p ; hsa-mir-548aw ; hsa-mir-202-5p ; hsa-mir-337-3p ; hsa-mir-3124-3p ; hsa-mir-6837-3p

Nearest miRNA

hsa-mir-1253/Upstream/1975307; hsa-mir-10226/Downstream/1919588;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/257289, chr17-CpG: 142/Downstream/35406

Upstream sequence

ATTACATCCAAATTATATTTCAGggccaggtgtggtggctcacgtttataatcccagcactttgggaggatgaggcaggaggatcacttgaggccaggag

Downstream sequence

CATCACACTGAATCCTCTCTCTCTAGGAGGGAGCTGTATATTTTATGAATGGTGTGAACCACTCCTGGATGTTACTTCCTGAATTTATTTAAAGAATTTA