VISDB Viral Integration Site DataBase

VIS ID

TVIS42000556

Fusion event

EBV-SSH2 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

49530

Orient

+

Integrated sequence

ACGCGCCATAGACAAGAGGCAGAGAGCCAGTGTGGCTGGGGCTGGTGCTCATGCACACCTTGGCGGGTCATCCGCCACCCCCGTCCAGCAGGCTCAGGCC| |GCCGCATCCGCTGGGACCGGGGCCTTGGCATCATCAGCGCCGTCCACGGCCGTAGCCCAGTCCGCGACCCCCTCTGTTTCTTCATCTATTAGCAGCCTCC

Chromosome

chr17

Cytoband

q11.2

Reference genome

Start

End

28054306/29727288 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-130b-5p ; hsa-mir-222-3p ; hsa-mir-20a-5p ; hsa-mir-155-5p ; hsa-mir-106b-5p ; hsa-mir-526b-5p ; hsa-mir-4445-5p ; hsa-mir-6766-3p ; hsa-mir-4782-3p ; hsa-mir-219a-5p ; hsa-mir-508-3p ; hsa-mir-574-5p ; hsa-mir-4693-3p ; hsa-mir-5584-3p ; hsa-mir-4311 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-196a-3p ; hsa-mir-6860 ; hsa-mir-661 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-766-3p ; hsa-mir-939-3p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-6849-3p ; hsa-mir-759 ; hsa-mir-5586-3p ; hsa-mir-508-5p ; hsa-mir-4797-5p ; hsa-mir-623 ; hsa-mir-6780b-3p ; hsa-mir-4780 ; hsa-mir-26a-5p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-93-5p ; hsa-mir-17-5p

Nearest miRNA

hsa-mir-1180/Upstream/336558; hsa-mir-10226/Downstream/389791;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/104029, chr17-CpG: 73/Downstream/33721

Upstream sequence

GTGGCACAGATTCAAATCACCAGGTGGTATTTATTAGATTTAGATTTCCATACTCCAATTCAACTATTGTAAATTAGAAATCATCATGATCCTTCAgctg

Downstream sequence

TTCGATCAAAAGAAGACAAGTGAATTTTACAAATTCATCTGTATTACATTACAATAGGATGTTAGTGAAAAACTGGCAAGCAGGTAATATTAAATTTCTT