VISDB Viral Integration Site DataBase

VIS ID

TVIS42000557

Fusion event

EBV-SLC6A4 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

102191

Orient

+

Integrated sequence

GGTGTTTACCCATTTGTTTAAACGAGCCATCTCTCATTGCACGTACGATGACGTGCTACATGACTGGAACAAGTTCGAGGCCTGCATCCAGAAGCGATGG| |CCGAGCGATGACTCGTGTGCGAGCCGGTTTCGTGAGTCCACCTTCGAGTCGTGGTCCACGACCATGAAGCTGACCGTGCGTGACCTGCTGACCACCAACA

Chromosome

chr17

Cytoband

q11.2

Reference genome

Start

End

28551112/30224094 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-16-5p ; hsa-mir-135a-5p ; hsa-mir-544a ; hsa-mir-3678-3p ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-2467-3p ; hsa-mir-17-3p ; hsa-mir-1205 ; hsa-mir-1184 ; hsa-mir-3158-5p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-1237-3p ; hsa-mir-5088-3p ; hsa-mir-5590-3p ; hsa-mir-142-5p ; hsa-mir-1264 ; hsa-mir-6507-3p ; hsa-mir-5089-5p ; hsa-mir-7156-3p ; hsa-mir-937-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-5702 ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-3130-3p ; hsa-mir-150-5p ; hsa-mir-186-3p ; hsa-mir-3934-5p ; hsa-mir-6890-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-6504-3p ; hsa-mir-512-3p ; hsa-mir-509-5p ; hsa-mir-509-3-5p ; hsa-mir-4418 ; hsa-mir-552-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-24-3p ; hsa-mir-1343-5p ; hsa-mir-141-5p ; hsa-mir-3150a-3p ; hsa-mir-3175 ; hsa-mir-491-5p ; hsa-mir-6756-5p ; hsa-mir-6763-5p ; hsa-mir-6766-5p ; hsa-mir-6825-5p ; hsa-mir-6878-5p ; hsa-mir-92a-2-5p ; hsa-mir-939-5p

Nearest miRNA

hsa-mir-1180/Upstream/106922; hsa-mir-10226/Downstream/870256;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/107101, chr17-CpG: 74/Downstream/11275

Upstream sequence

ggtgaccgaccaagaaactcaacccaagtctccaggtaaataaccaattatctagtccaacttggtccaaaaaaagaatttagaattcctggaggaaaag

Downstream sequence

ACGTTAAACAACTGACGAACTTGAAGGCCAAATGGCAGGGAGGAAGAGCTTTTCCCTGTGCGGCTGGAGGGCACCGAGTTGACAGAGCTGCTCCTTCCCT