VISDB Viral Integration Site DataBase

VIS ID

TVIS42000558

Fusion event

EBV-AP2B1 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

86377

Orient

+

Integrated sequence

AACAGAGGCTGGATGCAGCGCATCAGGCGAAGGCGGAGAAGACGGGCTGCCTTGTCCGGCCATCTTTTAGACACGGAAGACAATGTGCCGCCATGGTTGC| |CTCCACACGACATCACACCATATACCGCAAGGAATATCAGGGATGCTGCCTGCCGGGCTGTCAAGGTGAGTATGCCTCTAACTGGGTTCATGGGGGCCAT

Chromosome

chr17

Cytoband

q12

Reference genome

Start

End

34017637/35690618 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-34a-5p ; hsa-mir-16-5p ; hsa-mir-877-3p ; hsa-mir-744-5p ; hsa-mir-532-3p ; hsa-mir-615-3p ; hsa-mir-106b-5p ; hsa-mir-99a-5p ; hsa-mir-92a-3p ; hsa-mir-19b-3p ; hsa-mir-188-5p ; hsa-mir-623 ; hsa-mir-4780 ; hsa-mir-6866-3p ; hsa-mir-4325 ; hsa-mir-7703 ; hsa-mir-656-5p ; hsa-mir-6780b-3p ; hsa-mir-15a-5p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-214-3p ; hsa-mir-31-5p ; hsa-mir-3619-5p ; hsa-mir-3665 ; hsa-mir-3688-5p ; hsa-mir-424-5p ; hsa-mir-4524a-5p ; hsa-mir-4524b-5p ; hsa-mir-497-5p ; hsa-mir-503-5p ; hsa-mir-646 ; hsa-mir-6809-5p ; hsa-mir-6815-5p ; hsa-mir-6838-5p ; hsa-mir-6865-5p ; hsa-mir-761

Nearest miRNA

hsa-mir-1180/Upstream/3340416; hsa-mir-10226/Downstream/1343127;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/93493, chr17-CpG: 74/Downstream/40912

Upstream sequence

TACGAGTGCGCCCTCAGGGAATGCTTTCAGGGAAGAGGCAAAAGGTttcattcgccaggcattaactgagcgcccaccgaatgccaggcctgcgctgggt

Downstream sequence

cgtttttaacactctcctcctctccccaccatacagttccagaggtgctaccagtcctaagcctttgagaattctgtggtggtattgctaatccatctgt