Basic Information
VIS ID
TVIS42000559
Fusion event
EBV-LOC107985068 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
44877
Orient
-
Integrated sequence
TGTGTGGATTTAAATATGTACACAAGCGTAATTAACGAGTCACAGACCCCCTGTTCCAGATTCTGACCGGCTGCAAGCGCTGCCTTAAAGGCCTGGAAGC| |TGGGTGGGTAAATCTGACCAAACAGCACGCTCGGATTCGTGATGCTGTGGTTGATGGCACACAGGGGGTCGCAGAACAGGTGCTTGTGGAAGTCTTGCGG
Host Sequence
Chromosome
chr17
Cytoband
q12
Reference genome
GRCh37/hg19
Start
34358918/36031882 (Hg38)
End
34358918/36031882 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107985068
Nearest miRNA
hsa-mir-1180/Upstream/3681680; hsa-mir-10226/Downstream/1001863;
Nearest TSS
ENST00000595228/Upstream/13914; ENST00000616474/Downstream/32398;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/101038, chr17-CpG: 20/Downstream/134530
Upstream sequence
TGGCTGTAGACTGTTACCTCCAGTTCCCACAGTAACAATCGAAAGCCACGGTTGCCCTGGAGACgcgggggcggggcgcgcggacggcgccggcgcgggg
Downstream sequence
tgcctggatgctttcctacctctggcttgttttatggctgaatcttcctcatcttgtagggctcagattaattgtcaccttcttagagaggcctcctctg
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate