Basic Information
VIS ID
TVIS42000560
Fusion event
EBV-CEP112 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
67236
Orient
+
Integrated sequence
GGCATCTGCCTGGCCAATAACTACATAAGTAGGGATGAGCTGCTCCACACCCGCGCTGCCTCCCTGTTATACAATAGCATGACAGCCAAGGCTGACCGAC| |CAAGGGCCACCTGGATCCAGGAGCTGTTTCGCACTGCGGTGGAGGTAGAGACTGCCTTCATCGAGGCTCGTGGAGAGGGGGTTACCTTGGTGGATGTGCG
Host Sequence
Chromosome
chr17
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
63657990/65661872 (Hg38)
End
63657990/65661872 (Hg38)
Orient
+
Location type
Intronic
Target gene
CEP112
miRNAs that regulate target gene
hsa-mir-331-3p
Nearest miRNA
hsa-mir-10226/Upstream/839770; hsa-mir-1250/Downstream/1125200;
Nearest TSS
ENST00000595228/Upstream/20839; ENST00000583775/Downstream/81252;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/100059, chr17-CpG: 84/Downstream/529722
Upstream sequence
aatggcgtgaacccgggaagcggagcttgcagtgagccgagattgcgccactgcagtccgcagtccggcctgggcgacagagcgagactccgtctcaaaa
Downstream sequence
AGAGAGATTGACATCTATATTTTTTTTACACAGCAGATAAACTGGTAatgaatatatatatgtgtgtgtgtgtgtgtatatatatgtttatttatTTATT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate