Basic Information
VIS ID
TVIS42000561
Fusion event
EBV-chr17 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
56480
Orient
+
Integrated sequence
GGCCACGGCCGTTCGGGCGGCCTCCGCCAGGGATAGGAGGCGCTTCCAGCTTTCGTCGTCCAGGACCAAGGGGACGTCCACGTGCGGGCCCCTGTAGATG| |GAATTATCCTCGGGTTCTCCTCCTCCTTCCCCCGCCTCCTGATCTCCGCCCGAGAGCAGGTCGGTCAGGCGTCTGCGGGCCGCCTCCAGGTCAAATTTTC
Host Sequence
Chromosome
chr17
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
68241227/70245086 (Hg38)
End
68241227/70245086 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10226/Upstream/1145430; hsa-mir-1250/Downstream/4503527;
Nearest TSS
ENST00000595228/Upstream/75551; ENST00000442627/Downstream/123830;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/75507, chr17-CpG: 26/Downstream/1870752
Nearby gene
CALM2P1(-2708) ;
Upstream sequence
CCCTGCTCTGACAGCCCGGCCTGAAGAAGCAGCGCTGCCCAGTGTAAGAATCACACAGTCTGTGCTGAGAAGCTGGGCGGGCTTATTTCAGGGGGAAAAA
Downstream sequence
GGCTCCTGGAGAAGACCGAGTAATCCAGAATTAGCCACAGCTATTTCAGACTTCAGTACTGTTTCCCGCTGCCATACATTGCTGTCACTGCTACCAACCT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate