Basic Information
VIS ID
TVIS42000564
Fusion event
EBV-PPP4R1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
68518
Orient
+
Integrated sequence
CTGGCATCATAGCTGTGGTGGCCGGCCTGCTGACGTCAGCGGGGGACCTGCCGTTGGATCTTAGTGTTATTTTATTTAACCACGCCTCCGAAGAGGCGGC| |CGCCAGTACGGCCTCTGAGCCAGAAGATAAAAGTCCCCGGGTGCAACCACTGGGCACAGGACTCCAACAACGCCCCAGACATACGGTCAGTCCATCTCCT
Host Sequence
Chromosome
chr18
Cytoband
p11.22
Reference genome
GRCh37/hg19
Start
9614366/9614368 (Hg38)
End
9614366/9614368 (Hg38)
Orient
+
Location type
Intronic
Target gene
PPP4R1
miRNAs that regulate target gene
hsa-mir-101-3p ; hsa-mir-149-5p
Nearest miRNA
hsa-mir-3976/Upstream/3239943; hsa-mir-1-2/Downstream/1145216;
Nearest TSS
ENST00000575820/Upstream/73; ENST00000582435/Downstream/137;
Nearest CpG islands
chr18-CpG: 173/Target, None/Upstream, None/Downstream
Upstream sequence
ctgtagaggcacatatcctgctccacagaaagcaaagcagtactctaatttctggtctgagactaacgtgcctgtgcagacacgttgctgggtcaccaaa
Downstream sequence
ccgcgccgggaccccacgccggccccggcccggcAGCCACTCAGGGCTGCGGCGGAGGGCGGGTGGGCTCGAGGAGCCGCCGCCGCCCGGAGAACAGGGG
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate