Basic Information
VIS ID
TVIS42000566
Fusion event
EBV-chr18 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
9055
Orient
+
Integrated sequence
CATGTAAATAAAACCGTGACAGCTCATGGGGTGGGAGATATCGCTGTTCCTTAGGACCCTTTTACTAACCCTAATTCGATAGCATATGCTTCCCGTTGGG| |TAACATATGCTATTGAATTAGGGTTAGTCTGGATAGTATATACTACTACCCGGGAAGCATATGCTACCCGTTTAGGGTTAACAAGGGGGCCTTATAAACA
Host Sequence
Chromosome
chr18
Cytoband
q11.1
Reference genome
GRCh37/hg19
Start
18518946/20938985 (Hg38)
End
18518946/20938985 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-3156-2/Upstream/6108743; hsa-mir-1-2/Downstream/744533;
Nearest TSS
ENST00000575820/Upstream/5774518; ENST00000579454/Downstream/15885;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/5607810, chr18-CpG: 113/Downstream/171994
Upstream sequence
aagcagctgccatgttttgagtcactctgggaagaggccacatcccaaggaacacacaacttcagcccatgggtgacagggtttgagtgctgccaacagc
Downstream sequence
tgtttcaaaccttctctatgaaagggaatgttcaactctatgagttgaatgcaaacatcagaacgaaatttctgagaatgctgctgtccactttttatat
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate