Basic Information
VIS ID
TVIS42000567
Fusion event
EBV-LOC107985168 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
128306
Orient
+
Integrated sequence
AGTGCTAAAGAGTCTGAATCTGGAGAATATAGTGCAGGACTTTGAGGCCATCTTCACCTCCCCGTCTGATACCATCAGTGAGGCTGAAACCAAGGCCTTT| |GAGAAGCTGGTGGAGCAAGCCAAAAACACCGTAGAGAACATAGTCTTTTGCCTCAACAGCATCTGTTCCACCTCTACACTCCCAGATGTCGTCCCCGATG
Host Sequence
Chromosome
chr18
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
39013681/41433717 (Hg38)
End
39013681/41433717 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107985168
Nearest miRNA
hsa-mir-1-2/Upstream/1756938; hsa-mir-122/Downstream/3536365;
Nearest TSS
ENST00000575820/Upstream/1367431; ENST00000590220/Downstream/47351;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/1591852, chr18-CpG: 180/Downstream/3245301
Upstream sequence
ctgagaatgcttctgtctattttttatgggaagatatttcctttttcaccataggcgtcaaagcgctcgaaatgtccacttccacatactacaaaaagag
Downstream sequence
gtcattgtaagtaacactaaaagtatatgtatattttaaacagattttggttatatcatagtatttccttggaacaacttctgtaagtggagtgattgga
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate