Basic Information
VIS ID
TVIS42000568
Fusion event
EBV-LINC01416 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
43513
Orient
+
Integrated sequence
GTGGATACCACAGTCCAGGCCCCCAAGGCTACCGTGCTAATTACCTCCTCATGTCCACCCCCACCCTGTGTTACTGTCGCCTGATTATCCTGGCTTAGCA| |GCCTCCAAGTTTTACAAGACGTCCCATTGCCCTGCCCTTGGTCCAAGTCTCGCCGGTTTTCAGCAGCCTGTTGTAGCCTGCCCCCAAGTTTCGCAGGTTT
Host Sequence
Chromosome
chr18
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
53579337/55912106 (Hg38)
End
53579337/55912106 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA18B
Target gene
LINC01416
Nearest miRNA
hsa-mir-1-2/Upstream/432808; hsa-mir-122/Downstream/2538968;
Nearest TSS
ENST00000575820/Upstream/19068; ENST00000588803/Downstream/8093;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/131495, chr18-CpG: 57/Downstream/726082
Upstream sequence
aatattctttgcacataaattattaaagattgttccattctatgaatgttccaactctctttttgattgggtttttttttttttgcctctcagagtttta
Downstream sequence
GTTTTTTATGTCTGTTGTCCTATGCTATCACTATTGCAATAAGAAAGCCTGCACTGTTCTGATAACTGGGTCAATGTCTCGTCAAAACTCCTCATTTCGT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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