Basic Information
VIS ID
TVIS42000569
Fusion event
EBV-NETO1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
145462
Orient
+
Integrated sequence
TATTCCCTTGAGTGTTATAGCTTCCTCTTAACTTAAGCAAGAGCTCCAGGATGTTAGCTTTTTTGGTGGGGCTGGTTGTCAGGAAGAGGTTCCAGTGTTG| |TCCTTTATTTTTAGATGTTAGCTTTGTGTTAGGTTAGTATGGGCTGGGTATTCACTAGTGAAGGCAACTAACACAGTTAGACGTGCTAGTTGTGCCCACT
Host Sequence
Chromosome
chr18
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
70409826/72742591 (Hg38)
End
70409826/72742591 (Hg38)
Orient
+
Location type
Intronic
Target gene
NETO1
miRNAs that regulate target gene
hsa-mir-5692a ; hsa-mir-497-3p ; hsa-mir-6826-3p ; hsa-mir-3938
Nearest miRNA
hsa-mir-1-2/Upstream/5660905; hsa-mir-548av/Downstream/110730;
Nearest TSS
ENST00000575820/Upstream/104070; ENST00000578967/Downstream/6447;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/198036, chr18-CpG: 275/Downstream/124139
Upstream sequence
gcaaggtggatggaattatcttcattgtatgcatgaaaaatcaaaaattcagttgtcaaattaattgtccaaggtacacagAGACAATTCAAGCCTCTCT
Downstream sequence
GAATAAGTATCAACTTCTTTCAGCAGTACGTACTATGTTGAATATTAACGTGGTTATATTACAcattggtgaagagtgttggttgatcttgtggttggtg
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate