Basic Information
VIS ID
TVIS42000572
Fusion event
EBV-GNG7 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
4421
Orient
-
Integrated sequence
AAGAATCTCTTCCGGGCAGTCCAGCAGCTGGTCAAGAGCGGCATCGTGCTGTCAGGGCATGACATCAGCGACGGGGGCCTGGTGACCTGCCTGGTGGAGA| |TGGCCCTGGCCGGGCAGCGGGGAGTGACCATCACTATGCCGGTGGCCTCCGACTACCTCCCGGAGATGTTTGCAGAGCACCCCGGCCTGGTGTTTGAGGT
Host Sequence
Chromosome
chr19
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
2673351/2673353 (Hg38)
End
2673351/2673353 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA19B
Target gene
GNG7
miRNAs that regulate target gene
hsa-mir-92a-3p ; hsa-mir-3925-5p ; hsa-mir-4311 ; hsa-mir-4524a-3p
Nearest miRNA
hsa-mir-1227/Upstream/42560; hsa-let-7e/Downstream/1288061;
Nearest TSS
ENST00000633603/Upstream/41399; ENST00000586780/Downstream/10338;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/22440, chr19-CpG: 37/Downstream/29181
Upstream sequence
tgaagaagttgaatttgttcccagatgtgattcaaaaatggaggattttgagcagggtagtgacattatctcatttgtgtttcaaacagcatgtctgtga
Downstream sequence
gatgtcgggagtcaatggcatgtgggttcctggaaaaaacaagaaaatggaaataaagaccgggcgccgtggctcacgcctgtaatcccagcactttggg
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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