Basic Information
VIS ID
TVIS42000574
Fusion event
EBV-CATSPERD integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
168442
Orient
+
Integrated sequence
GCCAAAGGAGATCAACCAATAGAGTCCACCAGTTTTGTTGTAGATAGAGAGCAATAATGAGCAGGATGAGGTCTAGGAAGAAGGCTAGGAAGAAGGCCAA| |AAGCTGCCAGATGGTGGCACCAAGTCGCCAGAGCATCTCCAATAAGTAGATCCAGATACCTAAGACTGCGTTGAAAAAAGAGTGTTAGGGTTGGAAAAGT
Host Sequence
Chromosome
chr19
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
5744434/5744423 (Hg38)
End
5744434/5744423 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA19B
Target gene
CATSPERD
Nearest miRNA
hsa-mir-1227/Upstream/811683; hsa-let-7e/Downstream/645215;
Nearest TSS
ENST00000633603/Upstream/23746; ENST00000448307/Downstream/9088;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/23638, chr19-CpG: 39/Downstream/40965
Upstream sequence
AGATAGTCAGGCACACCTGACTCCAGGCTAGACGAGGGGGCTTGGATGATCCTTTGGTAACATCACTGTCTGGTTCTCATGGTCTTGATTTTCCATAGGT
Downstream sequence
TAGGCAGAAATCATTGGGTCTTTAGGCGGAATCTTCCACTTTTTTTCTTTGTCACAGGTTGCGATGCTTGTAGTGAATCAAGGGAAGGTAAGTAACTGCA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate