Basic Information
VIS ID
TVIS42000575
Fusion event
EBV-TEX45 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
54220
Orient
+
Integrated sequence
CCTCGGTCAGCAGCTCCGAGAAGAAGTCCCCCGTGGCCTGGAGGAGATCGTCCCGCTCTCGCCTTGTCAGCAGCTGGGGCTTCTTAGGCCAGAGCGCCGA| |GTCCGAGGCCAGCCTGGGCGGGGCGGTTGCCTGGGGGATAGTTGGAGGAGGAGGCAGGTTAGCCTGGCCTGGGTCATTAGTGGCTTCGGGTAGCGTCCGA
Host Sequence
Chromosome
chr19
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
7561834/7496948 (Hg38)
End
7561834/7496948 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA19B
Target gene
TEX45
Nearest miRNA
hsa-mir-1227/Upstream/760170; hsa-let-7e/Downstream/120491;
Nearest TSS
ENST00000633603/Upstream/3972; ENST00000597207/Downstream/501;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/7801, chr19-CpG: 93/Downstream/3870
Upstream sequence
ctgcctcggccttccaaagtgctgggcttacaggcctgagccaccaaacccagccAAAGATTACTTTATAAGAGTGGAAACTTGAggcctgggatggtgg
Downstream sequence
acaggtacattcctggtggtctttgactggggAAGGAGGGGTGACCGGCCCCTTTAAAGGGAGATCTGTGAGCCCTAGAATAATATCAAGAGGTGCAGTG
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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