Basic Information
VIS ID
TVIS42000576
Fusion event
EBV-CD209 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
95777
Orient
+
Integrated sequence
CAGGTACAGGACCTGGAAATGGCCTAGGAGAGAAGGGAGACACATCTGGACCAGAAGGCTCCGGCGGCAGTGGACCTCAAAGAAGAGGGGGTGATAACCA| |TGGACGAGGACGGGGAAGAGGACGAGGACGAGGAGGCGGAAGACCAGGAGCCCCGGGCGGCTCAGGATCAGGGCCAAGACATAGAGATGGTGTCCGGAGA
Host Sequence
Chromosome
chr19
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
7812427/7747541 (Hg38)
End
7812427/7747541 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA19B
Target gene
CD209
miRNAs that regulate target gene
hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-1273a ; hsa-mir-4696 ; hsa-mir-4252 ; hsa-mir-302d-5p ; hsa-mir-302b-5p ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-6849-3p ; hsa-mir-1273g-3p ; hsa-mir-6501-3p ; hsa-mir-451b ; hsa-mir-508-5p ; hsa-mir-3667-5p ; hsa-mir-4316 ; hsa-mir-4722-5p ; hsa-mir-7160-5p ; hsa-mir-3188 ; hsa-mir-2467-5p ; hsa-mir-3975 ; hsa-mir-1827 ; hsa-mir-4649-3p ; hsa-mir-6500-3p ; hsa-mir-3614-5p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-4636 ; hsa-mir-34b-3p ; hsa-mir-548aw ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-3670 ; hsa-mir-4698 ; hsa-mir-556-5p ; hsa-mir-596 ; hsa-mir-1252-3p ; hsa-mir-3662 ; hsa-mir-2114-3p ; hsa-mir-4768-3p ; hsa-mir-485-5p ; hsa-mir-495-5p ; hsa-mir-6087 ; hsa-mir-665 ; hsa-mir-6808-5p ; hsa-mir-6823-3p ; hsa-mir-6884-5p ; hsa-mir-6893-5p ; hsa-mir-940
Nearest miRNA
hsa-mir-1227/Upstream/130036; hsa-let-7e/Downstream/641749;
Nearest TSS
ENST00000633603/Upstream/7; ENST00000595751/Downstream/23;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/16017, chr19-CpG: 78/Downstream/40505
Upstream sequence
tctcaaaaaaaaaacaaaacaaaacaaaacaaaacaaaaaaaaacccagcaggtcatcaaaaccaatgagtctgagaagtgtcccagcagagtgtaagga
Downstream sequence
TCCTGGGGGCCACAGCTTTTATTTCCCACCCTGTGATCTTTACTTCCTAAATCTAGTCTCCCACAGAAAGAGAAACAGGAAGTTGGGTAGGGATCTGTCA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate