Basic Information
VIS ID
TVIS42000577
Fusion event
EBV-chr19 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
166273
Orient
+
Integrated sequence
TGGCGGAAACAACTCCCAATATCCATCTGCTTCTGGCTCTTCTGGGAACACCCCCACCCCACCGAACGATGAGGAACGTGAATCTAATGAAGAGCCCCCA| |CCGCCTTATGAGGACCCATATTGGGGCAATGGCGACCGTCACTCGGACTATCAACCACTAGGAACCCAAGATCAAAGTCTGTACTTGGGATTGCAACACG
Host Sequence
Chromosome
chr19
Cytoband
q11
Reference genome
GRCh37/hg19
Start
27887219/27396311 (Hg38)
End
27887219/27396311 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10395/Upstream/6996957; hsa-let-7e/Downstream/7726389;
Nearest TSS
ENST00000633603/Upstream/3249610; ENST00000588318/Downstream/244327;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/3424354, chr19-CpG: 42/Downstream/397309
Upstream sequence
CTGTCACCCTGAAAAATATTAATCCCTTCCATGTGGGTCCCCATACTTAATGAGTGCTGCACCTGCTACCCAGGTATGGTGTACCTGATATGTGGTTCTG
Downstream sequence
atcaaaagaaagtttctactctgtgaggggaatgcacacatcacaaagaagttaatgagaatgcttctgtctactttttatatgaagatattcccttttc
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate