Basic Information
VIS ID
TVIS42000578
Fusion event
EBV-LOC105372360 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
106732
Orient
+
Integrated sequence
TGATGGGCACGATGCCCACGACCCAAATCGCCCACCACCGCCCTGCGGTCTGGGTAACATTATAAAAGGTAACCGAGCTGACGCGGGCCCTGACGCTCTC| |CGCGGGTGTTTCCATCATTGTTTGAGATCTGAGGAGGACTGGACCCTTTAAAACATCCGGTCACGCCCTTTGCAAATTATTTAAAAGGTGAATGCTCAAC
Host Sequence
Chromosome
chr19
Cytoband
q12
Reference genome
GRCh37/hg19
Start
32023908/31533002 (Hg38)
End
32023908/31533002 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105372360
Nearest miRNA
hsa-mir-10395/Upstream/11133648; hsa-let-7e/Downstream/3589698;
Nearest TSS
ENST00000633603/Upstream/67349; ENST00000593063/Downstream/9037;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/175699, chr19-CpG: 27/Downstream/691476
Upstream sequence
AGACTTTCCTTCATTGTAACTTATTAGATAATCTGAAGTTAAACCGACAAACACATGTGTATTAAGATTTATTCATCTGAAGTCTTTTCTGTTTGTTTCA
Downstream sequence
tgtgtacaatttgatgagtttgaaatatgaaaacacctgtgataccatccccaaaatcaaggtagtaggtacacttaacatctcctggagttgccatgat
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate