Basic Information
VIS ID
TVIS42000579
Fusion event
EBV-FCGBP integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
48956
Orient
-
Integrated sequence
GGGCTGCCAGAGGCTGGCTGAGCCACCGAGCGCCCGCTCGGGCTGGCGGCCCCGAATCCGGGCAGTGCTGCCGCACAACGCGGCCTACGAGCTCGACCGT| |GGCTCCCGCCTCTTGGATGCCATCATCCCCTGCTTGGGACCCGACCGCACTTGCATGCGGCCGGTGGTCCTGCGGGGGGTGACGGTCAGGCAGCTCCTGT
Host Sequence
Chromosome
chr19
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
40417486/39911579 (Hg38)
End
40417486/39911579 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
FCGBP
Nearest miRNA
hsa-mir-10395/Upstream/81777; hsa-let-7e/Downstream/370964;
Nearest TSS
ENST00000633603/Upstream/5256; ENST00000596386/Downstream/23047;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/5501, chr19-CpG: 74/Downstream/3573
Upstream sequence
agaccgccatagtgccctatgacatgtatgagctctctctccctctctctttctttctctctctctctctgatgaataataagcttgaatgtgttcaatc
Downstream sequence
gttacattaggttaaattctgttagaactaaaaagcattagaaaatcagttcagaaaggcaaggaTTTGttttcttattctctcccctattgtatccgga
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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