VISDB Viral Integration Site DataBase

VIS ID

TVIS42000580

Fusion event

EBV-ZNF460 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

77380

Orient

+

Integrated sequence

AGCATGGAGAGGTTTGAGAATCTGGGCTGGGACGTTGGCGGGACTGGCACGGTGGCTTGGGCTGTGGTAACCGGTGGGCTCGTAAAAGTCCAGCGGGGCC| |GCAGTTTGCTAGAAGTGCTGGGAGGTAGATAGGTGGTCGCATTGTATCTCGGTCTTGGCGTAGTTGAATCACCGCCGTAATCTGTGGTGGGCTCTGTACT

Chromosome

chr19

Cytoband

q13.43

Reference genome

Start

End

57797702/57286334 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-7-5p ; hsa-mir-222-3p ; hsa-mir-143-5p ; hsa-mir-455-5p ; hsa-mir-545-5p ; hsa-mir-573 ; hsa-mir-595 ; hsa-mir-648 ; hsa-mir-3616-5p ; hsa-mir-3662 ; hsa-mir-3944-5p ; hsa-mir-4641 ; hsa-mir-4795-5p ; hsa-mir-155-3p ; hsa-mir-3074-3p ; hsa-mir-29a-5p ; hsa-mir-95-5p ; hsa-mir-7-1-3p ; hsa-mir-7-2-3p ; hsa-mir-204-3p ; hsa-mir-142-3p ; hsa-mir-485-5p ; hsa-mir-495-3p ; hsa-mir-508-5p ; hsa-mir-509-3p ; hsa-mir-922 ; hsa-mir-548e-5p ; hsa-mir-1261 ; hsa-mir-1827 ; hsa-mir-1910-3p ; hsa-mir-3611 ; hsa-mir-3920 ; hsa-mir-4533 ; hsa-mir-3976 ; hsa-mir-4639-5p ; hsa-mir-4646-5p ; hsa-mir-451b ; hsa-mir-5186 ; hsa-mir-5688 ; hsa-mir-6511a-5p ; hsa-mir-6758-5p ; hsa-mir-6856-5p ; hsa-mir-6884-5p ; hsa-mir-8080 ; hsa-mir-487a-5p ; hsa-mir-487b-5p ; hsa-mir-548l ; hsa-mir-548n ; hsa-mir-5579-5p ; hsa-mir-34a-3p ; hsa-mir-885-5p ; hsa-mir-3912-5p ; hsa-mir-6776-3p ; hsa-mir-361-5p ; hsa-mir-2115-3p ; hsa-mir-30a-5p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30b-5p ; hsa-mir-30e-5p ; hsa-mir-520a-5p ; hsa-mir-411-5p ; hsa-mir-1288-5p ; hsa-mir-5697 ; hsa-mir-4495 ; hsa-mir-6873-5p ; hsa-mir-9500 ; hsa-mir-499a-3p ; hsa-mir-4683 ; hsa-mir-4521 ; hsa-mir-6888-5p ; hsa-mir-22-3p ; hsa-mir-6891-5p ; hsa-mir-3173-3p ; hsa-mir-548ad-3p ; hsa-mir-548c-3p ; hsa-mir-6728-5p ; hsa-mir-5187-5p ; hsa-mir-3682-3p ; hsa-mir-3148 ; hsa-mir-1972 ; hsa-mir-9-3p ; hsa-mir-5093 ; hsa-mir-3928-3p ; hsa-mir-3688-3p ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-522-3p ; hsa-mir-224-3p ; hsa-mir-5692a ; hsa-mir-6835-3p ; hsa-mir-7856-5p ; hsa-mir-4328 ; hsa-mir-4709-3p ; hsa-mir-4799-5p ; hsa-mir-7977 ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-4779 ; hsa-mir-944 ; hsa-mir-335-3p ; hsa-mir-5096 ; hsa-mir-5009-3p ; hsa-mir-500a-5p ; hsa-mir-3121-3p ; hsa-mir-942-3p ; hsa-mir-570-3p ; hsa-mir-361-3p ; hsa-mir-6729-3p ; hsa-mir-1207-3p ; hsa-mir-383-5p ; hsa-mir-548t-3p ; hsa-mir-548ap-3p ; hsa-mir-548aa ; hsa-mir-4302 ; hsa-mir-6733-3p ; hsa-mir-5094 ; hsa-mir-7151-5p ; hsa-mir-4719 ; hsa-mir-4694-3p ; hsa-mir-27b-3p ; hsa-mir-27a-3p ; hsa-mir-513a-5p ; hsa-mir-153-5p ; hsa-mir-616-3p ; hsa-mir-6796-3p ; hsa-mir-1253 ; hsa-mir-661 ; hsa-mir-939-3p ; hsa-mir-3154 ; hsa-mir-6892-5p ; hsa-mir-5011-5p ; hsa-mir-4475 ; hsa-mir-4422 ; hsa-mir-5579-3p ; hsa-mir-486-5p ; hsa-mir-590-5p ; hsa-mir-21-5p ; hsa-mir-5089-5p ; hsa-mir-6807-5p ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-4252 ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-4433b-3p ; hsa-mir-3130-3p ; hsa-mir-4684-5p ; hsa-mir-3190-5p ; hsa-mir-5699-3p ; hsa-mir-4421 ; hsa-mir-4485-5p ; hsa-mir-339-5p ; hsa-mir-10b-5p ; hsa-mir-10a-5p ; hsa-mir-7703 ; hsa-mir-4325 ; hsa-mir-6720-5p ; hsa-mir-500a-3p ; hsa-mir-6512-3p ; hsa-mir-31-5p ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-766-3p ; hsa-mir-6849-3p ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-32-5p ; hsa-mir-25-3p ; hsa-mir-190a-3p ; hsa-mir-506-3p ; hsa-mir-124-3p ; hsa-mir-190b ; hsa-mir-190a-5p ; hsa-mir-3663-3p ; hsa-mir-488-5p ; hsa-mir-6501-3p ; hsa-mir-500b-3p ; hsa-mir-380-3p ; hsa-mir-411-3p ; hsa-mir-379-3p ; hsa-mir-502-3p ; hsa-mir-501-3p ; hsa-mir-6871-3p ; hsa-mir-1912 ; hsa-mir-1295b-5p ; hsa-mir-3910 ; hsa-mir-3714 ; hsa-mir-6859-5p ; hsa-mir-3125 ; hsa-mir-3916 ; hsa-mir-5585-3p ; hsa-mir-555 ; hsa-mir-4735-3p ; hsa-mir-18b-5p ; hsa-mir-18a-5p ; hsa-mir-3685 ; hsa-mir-202-3p ; hsa-mir-98-5p ; hsa-mir-4500 ; hsa-mir-4458 ; hsa-let-7i-5p ; hsa-let-7g-5p ; hsa-let-7f-5p ; hsa-let-7e-5p ; hsa-let-7d-5p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-mir-10a-3p ; hsa-mir-8081 ; hsa-mir-4445-5p ; hsa-mir-6766-3p ; hsa-mir-4782-3p ; hsa-mir-219a-5p ; hsa-mir-508-3p ; hsa-mir-571 ; hsa-mir-219a-1-3p ; hsa-mir-1233-3p ; hsa-mir-1225-3p ; hsa-mir-6500-3p ; hsa-mir-3614-5p ; hsa-mir-450b-5p ; hsa-mir-527 ; hsa-mir-518a-5p ; hsa-mir-4769-5p ; hsa-mir-4654 ; hsa-mir-4745-5p ; hsa-mir-4481 ; hsa-mir-549a ; hsa-mir-325 ; hsa-mir-5586-3p ; hsa-mir-3923 ; hsa-mir-330-3p ; hsa-mir-6079 ; hsa-mir-203b-3p ; hsa-mir-7158-3p ; hsa-mir-3202 ; hsa-mir-605-3p ; hsa-mir-890 ; hsa-mir-425-3p ; hsa-mir-3653-3p ; hsa-mir-34b-3p ; hsa-mir-4795-3p ; hsa-mir-4509 ; hsa-mir-4744 ; hsa-mir-126-5p ; hsa-mir-656-3p ; hsa-mir-7161-3p ; hsa-mir-3924 ; hsa-mir-6512-5p ; hsa-mir-6077 ; hsa-mir-3679-5p ; hsa-mir-1185-5p ; hsa-mir-1277-5p ; hsa-mir-3117-3p ; hsa-mir-4257 ; hsa-mir-6847-5p ; hsa-mir-8083 ; hsa-mir-3169 ; hsa-mir-4759 ; hsa-mir-2681-5p ; hsa-mir-140-3p ; hsa-mir-6729-5p ; hsa-mir-4649-5p ; hsa-mir-1273a ; hsa-mir-4486 ; hsa-mir-4793-3p ; hsa-mir-4267 ; hsa-mir-1273g-3p ; hsa-mir-548s ; hsa-mir-223-3p ; hsa-mir-3165 ; hsa-mir-3926 ; hsa-mir-3656 ; hsa-mir-4786-5p ; hsa-mir-7162-3p ; hsa-mir-544b ; hsa-mir-4277 ; hsa-mir-584-3p ; hsa-mir-6765-3p ; hsa-mir-3622b-3p ; hsa-mir-3622a-3p ; hsa-mir-887-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-665 ; hsa-mir-4768-3p ; hsa-mir-653-3p ; hsa-mir-4420 ; hsa-mir-181b-3p ; hsa-mir-181b-2-3p ; hsa-mir-6739-5p ; hsa-mir-6733-5p ; hsa-mir-3153 ; hsa-mir-4668-5p ; hsa-mir-6124 ; hsa-mir-676-5p ; hsa-mir-1236-3p ; hsa-mir-6515-3p ; hsa-mir-4737 ; hsa-mir-431-5p ; hsa-mir-150-5p ; hsa-mir-6814-5p ; hsa-mir-3691-3p ; hsa-mir-1264 ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-1226-5p ; hsa-mir-4253 ; hsa-mir-4269 ; hsa-mir-4514 ; hsa-mir-4692 ; hsa-mir-4696 ; hsa-mir-4742-5p ; hsa-mir-4761-3p ; hsa-mir-6715b-5p ; hsa-mir-6862-5p ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4793-5p ; hsa-mir-5196-3p ; hsa-mir-5694 ; hsa-mir-1228-5p ; hsa-mir-541-3p ; hsa-mir-654-5p ; hsa-mir-7160-5p

Nearest miRNA

hsa-let-7e/Upstream/1898092; hsa-mir-10394/Downstream/1048354;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/5479, chr19-CpG: 26/Downstream/31237

Upstream sequence

CCCAGCGTCCCAACCCAGCCTCACCCAGGAGGCCCAGCTGCTGCAGTCTTGGTTCCTTGGAGTCACTCATGTCACCCCACTCTCCCCCAGTGTCCAGAAC

Downstream sequence

gtaattgctatggggcaccatgaactgcaccatgtaagacagctttatcaataaatgttatgtgtgttctgactgctccacttactggccattccctctc