Basic Information
VIS ID
TVIS42000581
Fusion event
EBV-chr2 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
90678
Orient
-
Integrated sequence
CTGGGAACAGCTGAGGTGCTGCATAAGCTTGATAAGCATTCTCAGGAGCAGGCTGAGGGGCAGAAAACCACGACCCAGTCGGAGCGGTTGAAACATGATA| |GGCAGTTAGCTGGCCTTGTGGCAGAGGCTCTGGCAGCACCGGCCACAGCACACAAGGCAAAGGAGCTTGCGATGGCCCTCCCAGGTCCTGATAGACTCTG
Host Sequence
Chromosome
chr2
Cytoband
p25.2
Reference genome
GRCh37/hg19
Start
5221508/5081375 (Hg38)
End
5221508/5081375 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10b/Downstream/893287;
Nearest TSS
ENST00000437798/Upstream/425160; ENST00000322002/Downstream/474656;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/972522, chr2-CpG: 26/Downstream/591975
Upstream sequence
TCTCTGTCACCATCTATCATATGAATATCTGATGTATTTTTGTCATTTCGCCTCAAGCGGTAATTTTTATAAGCACGTTGAATGATGGTTGCTGAAACTG
Downstream sequence
TGCTGGGAACTTGGTAAATTAGTGTTGTCCCTCCTTTCTTCCATTCTGAATTTTATTTCTCCTTAAACAATTGTCCATAGGATTTTTCTGGAGGAAGAAT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate