Basic Information
VIS ID
TVIS42000583
Fusion event
EBV-chr2 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
93107
Orient
+
Integrated sequence
GTCGACTGCGACCTCCCACCTAGCCACCCACTCCTGACAGCCCAGAGGGGGCTGTTCCTGGCAAGAGTCTTGCAGGCTGTACAGCAGCACAAGCTGCTGG| |AAGACACCATCGTCCCCAAGATCTTAAAGAAGCTGGCTTATTTCTTAGAGCTGCTAAGCTACTACTCCCCCAAGGATGAACAGCGTGACATCGCCGAGGT
Host Sequence
Chromosome
chr2
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
16166998/16026876 (Hg38)
End
16166998/16026876 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-3125/Upstream/3289432; hsa-mir-10b/Downstream/3321553;
Nearest TSS
ENST00000437798/Upstream/84627; ENST00000442387/Downstream/23551;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/12579, chr2-CpG: 50/Downstream/481219
Upstream sequence
ggtttaattggctcacagttctgtaaacttcacaggaagtgtggtgctagcatctgcttggcttctagggaggcctcagaaatcttacaatcatggcgga
Downstream sequence
TCTTAAAACTGAGCTTTGAATTTCTTTTCCAGCAACTTCCTGGAAGCagcacggttgaaagagcccttggctggaagcccagctgactggctttgtgatc
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate