Basic Information
VIS ID
TVIS42000584
Fusion event
EBV-chr2 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
114965
Orient
+
Integrated sequence
AGTAGCTTTCACCCAACAACTTTCCCAACTAACCCGTGTCTGGACAGTGAAGAACGCTTCCCTGATCAGGTCTGAATTTTTATAGATACGGGAGTAGGAG| |GTGGGAATAACAACTGGGATTTCTTGTTGTGCTGTCCAGGCCTGCATGGCCAGTTTTTCCCTGAAGCTAGCAGAAATTCTGAGGGCCACTGAAATGAGGA
Host Sequence
Chromosome
chr2
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
16185938/16045816 (Hg38)
End
16185938/16045816 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-3125/Upstream/3308372; hsa-mir-10b/Downstream/3302613;
Nearest TSS
ENST00000437798/Upstream/103567; ENST00000442387/Downstream/4611;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/31519, chr2-CpG: 50/Downstream/462279
Nearby gene
GACAT3(+4611) ;
Upstream sequence
tggggaactatgctgtctatgcaaagacctgctgggaattgcacactcacgtgggccagtgagacaggttcgtcagctgctgtcacacagcagatcctga
Downstream sequence
GAGTAGACTTGAGGAGTTCAATCTGTCATAACTATTCCCCTcaatttctctctttctattctccccataatgctcactttacaatttgaagttaaattga
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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